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You shouldn't really be mixing manure and lime, as Good life said scrape away the manure and replace with compost. ;D
I would dig them up and replant them with compost iin the hole, they are not very big and should be just fine. Squash often loose the older leaves when they are planted out especially if early, they nay sulk for a while but they will pick up if the soil conditions are more favourable for young plants.XX Jeannine